switches to regex to better identify targets with start and stop

broadinstitute / pilon

Pilon is an automated genome assembly improvement and variant detection tool

GNU General Public License v2.0

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switches to regex to better identify targets with start and stop #30

Closed bwlang closed 7 years ago

bwlang commented 7 years ago

Some tools (e.g. Quiver) can produce contigs with : in names. This change can handle these contigs with or without start and stop positions e.g. contig1 and contig1_subseq_103003:108470

fixes #29

w1bw commented 7 years ago

Thanks for the contribution, and sorry it has taken me so long to get caught up with pilon support.

This will be included in the upcoming 1.22 release.