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broadinstitute / pilon

Pilon is an automated genome assembly improvement and variant detection tool
GNU General Public License v2.0
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use pilon to polish cause error #57

Closed lijingjing1 closed 5 years ago

lijingjing1 commented 7 years ago

Writing Contig1491|arrow:8180512-16361022 VCF to Sample.101.id/Sample.101.id.vcf Exception in thread "main" java.lang.reflect.InvocationTargetException at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.lang.reflect.Method.invoke(Method.java:497) at com.simontuffs.onejar.Boot.run(Boot.java:340) at com.simontuffs.onejar.Boot.main(Boot.java:166) Caused by: java.lang.IllegalArgumentException: requirement failed: can't fetch base outside region

i have a scaffold can't fetch base outside region?

wenjiexiaomeng commented 6 years ago

I also got this problem，have you solved this?