Multiple rounds of polishing using pilon

broadinstitute / pilon

Pilon is an automated genome assembly improvement and variant detection tool

GNU General Public License v2.0

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Multiple rounds of polishing using pilon #64

Closed efratca closed 5 years ago

efratca commented 6 years ago

Hi,

I noticed that when I ran several rounds of polishing with pilon I got an assembly with less mismatches and indels. Is it recommended to run several rounds of pilon?

Thanks

jelber2 commented 5 years ago

See my comments on https://www.biostars.org/p/317509/#319539