Hi,
I would like to prevent pilon to fiddle with InDels in my sequence in regions which align to related species transcriptome CDS. In this way, the HSPs obtained by say blastn/blastx have length divisible by three.
So pilon should avoid regions with consensus length exactly same as in this input file:
contigname:start-stop.
In contrary, same file could be used to direct pilon to look for InDels in region where consensus length differs.
Thank you
Hi, I would like to prevent pilon to fiddle with InDels in my sequence in regions which align to related species transcriptome CDS. In this way, the HSPs obtained by say blastn/blastx have length divisible by three.
So pilon should avoid regions with consensus length exactly same as in this input file:
contigname:start-stop.In contrary, same file could be used to direct pilon to look for InDels in region where consensus length differs. Thank you