Create CLI to align sequences in a FASTA file - Githubissues

broadinstitute / poasta

Fast and exact gap-affine partial order alignment

BSD 3-Clause "New" or "Revised" License

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Create CLI to align sequences in a FASTA file #1

Closed lrvdijk closed 5 months ago

lrvdijk commented 1 year ago

Create the align CLI subcommand

[x] Align sequences in a given FASTA file
[x] Save graph to disk
[x] Allow for loading an existing graph
[x] Allow for specifying the mismatch/gap open/gap extend costs

lrvdijk commented 5 months ago

Complete after https://github.com/broadinstitute/poasta/commit/866923007073ddf5b61e490f9bb33f34f69fd2e2