broadinstitute pooled-cell-painting-image-processing issues

broadinstitute / pooled-cell-painting-image-processing

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issues

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Inconsistent use of Metadata_Well vs Metadata_Well_Value

#28 ErinWeisbart opened 2 months ago
1
update

#27 ErinWeisbart closed 4 months ago
0
Add into FIJI script variable to handle pixel offset

#26 ErinWeisbart opened 5 months ago
0
FIJI Stitching - make fusion method configurable

#25 ErinWeisbart opened 7 months ago
0
split SABER illum correction by round

#24 ErinWeisbart opened 11 months ago
1
Set EBS_VOL_SIZE size in 4 and 8 based on num images

#23 ErinWeisbart opened 1 year ago
0
Stacking noise in `quarter_if_round=False`

#22 ErinWeisbart opened 1 year ago
0
Double machine (memory) size for SABER in 1-Illum Painting

#21 ErinWeisbart opened 1 year ago
0
Update 7_Preprocessing_Notebook.ipynb

#20 rsenft1 closed 1 year ago
1
Add updated pipelines

#19 rsenft1 closed 1 year ago
0
Keep or drop FIFO queue checking?

#18 rsenft1 opened 1 year ago
2
Update BatchStitchPooledCellPainting_StitchAndCrop_Headless.py

#17 rsenft1 closed 1 year ago
5
Handle small-round well stitches

#16 bethac07 closed 1 year ago
0
Write make_pipelines for each step

#15 ErinWeisbart opened 2 years ago
0
Refactor - move to Bray et al names

#14 bethac07 opened 2 years ago
3
Refactor Config Handling (and a few other improvements)

#13 ErinWeisbart closed 2 years ago
2
Remove extra 7s from fleet file

#12 bethac07 closed 3 years ago
0
Refactor- everything writes to its own folder

#11 bethac07 opened 3 years ago
0
Add offset and compression to stitching, fix round stitching by padding with noise

#10 bethac07 closed 3 years ago
1
Enhancement- refactor to use step functions instead of individual lambda triggers?

#9 bethac07 opened 3 years ago
3
Refactor - a general monitor lambda for shutdowns and starts

#8 bethac07 opened 3 years ago
0
Refactor- use a single config file

#7 bethac07 closed 2 years ago
1
first working round stitch, first pass at updating runfiles

#6 bethac07 closed 3 years ago
0
use an FIFO queue to try to minimize multi-starts; return a note that cluster has started for email filtering

#5 bethac07 closed 4 years ago
0
Add checks so things don't launch in multiple copies

#4 bethac07 closed 4 years ago
3
Many nd2 files instead of one, barcoding all in slow mode, no more fast phalloidin

#3 bethac07 closed 4 years ago
0
Step 2-3 causes an infinite recursion loop on pipeline upload

#2 bethac07 opened 4 years ago
0
Map handoffs and checkpoints for genome scale runs of image analysis workflow

#1 bethac07 opened 4 years ago
2