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broadinstitute / pooled-cell-painting-profiling-recipe

:woman_cook: Recipe repository for image-based profiling of Pooled Cell Painting experiments
BSD 3-Clause "New" or "Revised" License
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Add feature select step to recipe #17

Closed gwaybio closed 4 years ago

gwaybio commented 4 years ago

Here, we add the feature selection step to the pooled cell painting recipe. We use pycytominer.feature_select() to perform the feature selection, and we include all options in an updated config file.

We will not support feature selection on individual site-specific single-cell files (for now at least).

gwaybio commented 4 years ago

oof... looks like pieces of #16 slipped into this pull request.... lets review normalize in #16 (ignore the normalize specific changes here) my bad!

(we will fix this later, upon merge) nbd