Noting two things to be fixed in a future pull request:
force not defined
(pooled-cp) wm962-fdf:0.preprocess-sites gway$ python 4.image-and-segmentation-qc.py
Traceback (most recent call last):
File "4.image-and-segmentation-qc.py", line 113, in <module>
if check_if_write(output_file, force, throw_warning=True):
NameError: name 'force' is not defined
Error concatenating
Done concatenating image files
Traceback (most recent call last):
File "4.image-and-segmentation-qc.py", line 478, in <module>
image_corr_df = pd.concat(image_corr_list).drop_duplicates(subset="site").reset_index()
File "/Users/gway/miniconda3/envs/pooled-cp/lib/python3.7/site-packages/pandas/core/reshape/concat.py", line 281, in concat
sort=sort,
File "/Users/gway/miniconda3/envs/pooled-cp/lib/python3.7/site-packages/pandas/core/reshape/concat.py", line 329, in __init__
raise ValueError("No objects to concatenate")
ValueError: No objects to concatenate
Noting two things to be fixed in a future pull request:
force
not definedError concatenating
These should be quick fixes