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broadinstitute / pooled-cell-painting-profiling-recipe

:woman_cook: Recipe repository for image-based profiling of Pooled Cell Painting experiments
BSD 3-Clause "New" or "Revised" License
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Maintaining different versions of recipe #59

Closed hillsbury closed 2 years ago

hillsbury commented 3 years ago

Generally, we want to avoid incorporating experiment/dataset-specific steps into the recipe. However, this became necessary when handling the slightly different column names between CP074 and CP151.

Specifically, CP151 has columns Metadata_Well, Metadata_Site, and Metadata_Plate; CP074 has columns Metadata_Site and Metadata_TopFolder, which contains both plate and well information.

hillsbury commented 3 years ago

Currently will proceed with branches on forked recipe for now

ErinWeisbart commented 2 years ago

Between CP074 and CP151 we locked into an image analysis workflow so that the Metadata will not vary with future runs off of Metadata_Well, Metadata_Site, and Metadata_Plate. We can re-open a discussion if column names turn out to vary or change in the future.