Barcode controls missing from guide abundance summary (cell count per perturbation)

broadinstitute / pooled-cell-painting-profiling-recipe

:woman_cook: Recipe repository for image-based profiling of Pooled Cell Painting experiments

BSD 3-Clause "New" or "Revised" License

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Barcode controls missing from guide abundance summary (cell count per perturbation) #61

Closed hillsbury closed 3 years ago

hillsbury commented 3 years ago

Currently, control barcodes (sg_nt and NT) are specifically removed in generating summary counts and visualizations in 3.visualize-cell-summary.py, most likely so that NT doesn't dominate in visualizations.

Solutions: update step in weld -or- fix in a separate script