broadinstitute / pooled-cell-painting-profiling-recipe

:woman_cook: Recipe repository for image-based profiling of Pooled Cell Painting experiments
BSD 3-Clause "New" or "Revised" License
6 stars 4 forks source link

Cell count file is outputting NaN for plate, well, and site_location columns #66

Closed gwaybio closed 3 years ago

gwaybio commented 3 years ago

The issue is in https://github.com/broadinstitute/pooled-cell-painting-profiling-recipe/blob/886a601761ab62f9ee07b4996c6add9689b41077/0.preprocess-sites/2.process-cells.py#L204-L208

somewhere along the line, we introduced missing values. I need to track down.