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broadinstitute / pooled-cell-painting-profiling-recipe

:woman_cook: Recipe repository for image-based profiling of Pooled Cell Painting experiments
BSD 3-Clause "New" or "Revised" License
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Add output file specifically for comparison to NGS data. #77

Closed ErinWeisbart closed 2 years ago

ErinWeisbart commented 3 years ago

I think current consensus is that we don't want to add NGS comparison to the recipe itself because it requires additional data input. However it is an experiment we are likely to want to do on many datasets.

Can we add an output from the recipe of a file specifically formatted for easy comparison to NGS data? Will get exact requirements from Maria and report back.

ErinWeisbart commented 3 years ago

@mlozada21 says "a list of barcodes called and number of times they are called."