Closed gwaybio closed 4 years ago
the last two commits add the command argument parser utility function from the recipe to the template. The template repo will need the command args for the multi-plate processing updated weld procedure
We need to update the config documentation files. I do not think much will need to be added, just rearranged.
I'm happy to deal with the documentation update.
thanks for the helpful comments @ErinWeisbart - I addressed them in the recent commits. PR ready for another look when you get a chance
This pull request represents a major update and breaking change to the configuration file processing. The PR addresses 2 of 3 (and lays the groundwork for the remaining 1/3) of #10.
The PR also simultaneously begins the foray into multi-plate options as described in broadinstitute/pooled-cell-painting-profiling-recipe#50.
Specific Updates
config_utils.py
) in this repo. It didn't make sense to me to separate the config files from the configuration processing code. I will remove this script in the recipe in a future PR.config_utils.py
script.Next Steps
Once this pull request is digested and reviewed, we will need to perform several things: