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broadinstitute / pooled-cell-painting-profiling-template

:hammer_and_wrench: Use me to version control Pooled Cell Painting data and processing pipelines
BSD 3-Clause "New" or "Revised" License
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Conda environment install not working #8

Closed ErinWeisbart closed 4 years ago

ErinWeisbart commented 4 years ago

Tried installing conda environment on a new (Windows) computer and got:

Solving environment: failed

ResolvePackageNotFound:
  - conda-forge::scipy=1.4.1
ErinWeisbart commented 4 years ago

It also gives this warning while attempting the install:

Warning: you have pip-installed dependencies in your environment file, but you do not list pip itself as one of your conda dependencies.  Conda may not use the correct pip to install your packages, and they may end up in the wrong place.  Please add an explicit pip dependency.  I'm adding one for you, but still nagging you.
gwaybio commented 4 years ago

The last warning is ok - I see it all the time even after adding pip - and it never breaks anything.

Also, looking at the conda-forge scipy distributions it looks like windows versions are pretty far behind.

image

Can you try replacing with - conda-forge::scipy=1.3.2?

Actually, after typing this I realize that we don't use scipy at all in the welding procedure. It is safe to remove to reduce dependencies!