Making our images publicly-available

[gwaybio]

As we work towards publication, we also need to work towards making our data publicly available. The bulk profiles are already available, but it is a larger push to make our images public.

The group discussed this process today, and @shntnu recommended CellPainting gallery.

In this issue, we can discuss:

1. Selecting batches to upload (which do we include in the manuscript, some were pilot batches),
2. Thawing data
3. Moving to the gallery
4. Adding fluorescence and brightfield images

[mekelley]

Selecting batches to upload

I have a spreadsheet correlating batches with plate number and experimental conditions going back to batch 8. I can keep adding plates from batches 7 and earlier if they're included in the final dataset. Let me know:

https://docs.google.com/spreadsheets/d/1kCvDYi8K4CKlLRnD9nVITuAUR-gGn_tnjmC9pMTD-Dk/edit?usp=sharing

Not included in the spreadsheet are the brightfield plate numbers since we didn't end up using them but I can dig those numbers up if necessary

[gwaybio]

Nice! @mekelley - this seems very relevant to point 1: Selecting batches to upload.

I can keep adding plates from batches 7 and earlier if they're included in the final dataset. Let me know:

Are we going to include data from batch 7 and earlier? I suppose when I track back through some of the analyses you point me towards, we'll know for sure.

[gwaybio]

@shntnu - pinging to make sure this is on your radar. It would be great to add this to RODA! Do you think that would be possible?

[gwaybio]

@shntnu - checking in on this. Do you need help getting this posted?

[shntnu]

@gwaybio This was, but buried :)

I've kicked things off in https://github.com/broadinstitute/cellpainting-gallery/issues/49#issuecomment-1611529374

Let's head over there for the rest of the discussion