Closed ch-kr closed 1 year ago
This PR adds minor changes to the schema of the final regional missense constraint (RMC) results Hail Table (HT).
The current schema is:
---------------------------------------- Global fields: 'plateau_models': struct { 'total': dict<bool, array<float64>> } 'plateau_x_models': struct { 'total': dict<bool, array<float64>> } 'plateau_y_models': struct { 'total': dict<bool, array<float64>> } 'coverage_model': tuple<float64, float64> ---------------------------------------- Row fields: 'section_obs': int64 'section_exp': float64 'section_oe': float64 'section_chisq': float64 'transcript': str 'interval': interval<locus<grch37>> ---------------------------------------- Key: ['interval', 'transcript'] ----------------------------------------
This PR removes the models from the globals (they do not need to be stored on the results HT and are taking up unnecessary space) and adds the p-value threshold associated with RMC region search/the resulting regions to the final RMC HT.
This PR adds minor changes to the schema of the final regional missense constraint (RMC) results Hail Table (HT).
The current schema is:
This PR removes the models from the globals (they do not need to be stored on the results HT and are taking up unnecessary space) and adds the p-value threshold associated with RMC region search/the resulting regions to the final RMC HT.