Update prepare_pop_path_ht function to filter gnomAD public release to high quality, common variants (previously only filtered gnomAD public release HT on AF)
Update prepare_pop_path_ht function to filter joint ClinVar/gnomAD HT to set of transcripts to keep (previously kept variants in all transcripts)
Minor changes:
Created get_gnomad_public_release function (moved code getting gnomAD public release HT and annotating with coverage to a function)
Added filter_to_rare option to keep_criteria function
Major changes:
prepare_pop_path_htfunction to filter gnomAD public release to high quality, common variants (previously only filtered gnomAD public release HT on AF)prepare_pop_path_htfunction to filter joint ClinVar/gnomAD HT to set of transcripts to keep (previously kept variants in all transcripts)Minor changes:
get_gnomad_public_releasefunction (moved code getting gnomAD public release HT and annotating with coverage to a function)filter_to_rareoption tokeep_criteriafunction