Repo set up updates - Githubissues

broadinstitute / regional_missense_constraint

Code to calculate regional missense constraint

BSD 3-Clause "New" or "Revised" License

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Repo set up updates #292

Closed ch-kr closed 1 year ago

ch-kr commented 1 year ago

Major update:

Added pyproject.toml file so that we can add this repo as a Python package when starting Hail clusters (requires either setup.py or pyproject.toml file). (Copied format of the pyproject.toml file in gnomad_qc)

Minor updates:

Created requirements-dev.in, which will automatically update requirements-dev.txt
Ran pip-compile command to update requirements-dev.txt
Updated gnomAD dependency in requirements.txt
Update precommit version and added autopep8 to .pre-commit-config.yaml

ch-kr commented 1 year ago

I opened an issue in that repo (https://github.com/broadinstitute/gnomad-constraint/issues/13) but let's just add gnomad_qc here for now

ch-kr commented 1 year ago

we are ignoring the workflow errors because the mypy error is fixed in https://github.com/broadinstitute/regional_missense_constraint/pull/291 (and we will reformat the other files afterwards)