Closed ch-kr closed 1 year ago
PR adds code to create three release files:
Note that the current browser release HT exists at this temp path gs://regional_missense_constraint/temp/demo_release.ht with the following schema:
gs://regional_missense_constraint/temp/demo_release.ht
---------------------------------------- Global fields: 'p_value': float64 'all_canonical_transcripts': set<str> 'qc_pass_transcripts': set<str> 'outlier_transcripts': set<str> 'extra_transcripts': set<str> 'outlier_transcripts_searched': set<str> 'transcripts_searched': set<str> 'transcripts_no_rmc_all': set<str> 'transcripts_no_rmc_qc': set<str> 'rmc_transcripts_all': set<str> 'rmc_transcripts_qc': set<str> ---------------------------------------- Row fields: 'transcript': str 'regions': array<struct { start_coordinate: locus<GRCh37>, stop_coordinate: locus<GRCh37>, start_aa: str, stop_aa: str, obs: int64, exp: float64, oe: float64, chisq: float64, p: float64 }> ---------------------------------------- Key: ['transcript']
My current plan to run this code is to:
regional_constraint.py
create-release
PR adds code to create three release files:
Note that the current browser release HT exists at this temp path
gs://regional_missense_constraint/temp/demo_release.ht
with the following schema:My current plan to run this code is to:
regional_constraint.py
withcreate-release
command