(hopefully) last PR migrating region search code to GRCh38.
Major changes:
Update docker image and remove option for custom machine in rmc/pipeline/two_breaks/run_batches.py
Minor changes:
Remove gnomad_qc from requirements (looks like it's been added to gnomad-constraint requirements)
Update number of desired partitions for constraint tables in rmc/pipeline/regional_constraint.py (also clean up some booleans and remove an obsolete TODO)
Remove parallel_file_exists usage (function has been removed from gnomad_methods; rmc/utils/simultaneous_breaks.py)
Remove dated cluster guidance in rmc/pipeline/two_breaks/run_batches_dataproc.py
(hopefully) last PR migrating region search code to GRCh38.
Major changes:
rmc/pipeline/two_breaks/run_batches.pyMinor changes:
gnomad_qcfrom requirements (looks like it's been added to gnomad-constraint requirements)rmc/pipeline/regional_constraint.py(also clean up some booleans and remove an obsolete TODO)parallel_file_existsusage (function has been removed from gnomad_methods;rmc/utils/simultaneous_breaks.py)rmc/pipeline/two_breaks/run_batches_dataproc.py