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broadinstitute
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regional_missense_constraint
Code to calculate regional missense constraint
BSD 3-Clause "New" or "Revised" License
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Include RMC rescue option for missense badness and MPC
#260
lw453
closed
1 year ago
0
Missense badness and MPC fixes
#259
lw453
closed
1 year ago
0
Finalize fixes
#258
ch-kr
closed
1 year ago
0
Fix lof imports
#257
ch-kr
closed
1 year ago
0
Finalize RMC results
#256
lw453
closed
1 year ago
0
Bug fixes/cosmetic update
#255
ch-kr
closed
1 year ago
0
Overwrite and n_partitions additions
#254
ch-kr
closed
1 year ago
0
Cumulative obs fix
#253
lw453
closed
1 year ago
0
Rescue search updates
#252
ch-kr
closed
1 year ago
0
Run batches fix
#251
ch-kr
closed
2 years ago
0
Fix merged HT path
#250
ch-kr
closed
2 years ago
0
Bugs found at runtime for simul breaks
#249
ch-kr
closed
2 years ago
0
Update hail version in Dockerfile
#248
ch-kr
closed
2 years ago
0
Flow fix 2
#247
ch-kr
closed
2 years ago
0
Flow completion
#246
lw453
closed
2 years ago
0
Add runtime tag
#245
ch-kr
closed
2 years ago
1
Flow fix 1
#244
ch-kr
closed
2 years ago
0
Flow part 1
#243
ch-kr
closed
2 years ago
0
Added first skeleton README
#241
ch-kr
closed
2 years ago
0
Add first pass at README
#240
ch-kr
closed
2 years ago
0
Create buckets for freeze 1 data
#239
ch-kr
closed
2 years ago
2
Data freezes 2
#238
lw453
closed
2 years ago
1
Add filter on number of expected missense variants
#237
ch-kr
closed
2 years ago
0
Create branch for code used to generate v2.1.1 freeze 1 results
#236
ch-kr
closed
2 years ago
2
Create first draft AGBT poster
#235
ch-kr
closed
2 years ago
0
Create test data to validate breaks search
#234
ch-kr
closed
1 year ago
5
Reach out to hail team for code review
#233
ch-kr
closed
2 years ago
2
Clean up data in temp bucket
#232
ch-kr
closed
2 years ago
1
Rewrite constraint_prep HT resource
#230
ch-kr
closed
2 years ago
1
Update finalize RMC code
#229
ch-kr
closed
1 year ago
1
Update regional_constraint.py to accommodate new search pattern
#228
ch-kr
closed
1 year ago
6
Impose expected missense filter
#227
ch-kr
closed
2 years ago
1
Prepare for AGBT
#226
ch-kr
closed
2 years ago
0
Prepare for ASHG
#225
ch-kr
closed
1 year ago
0
Update RMC flow
#224
ch-kr
closed
1 year ago
1
Data freezes
#223
ch-kr
closed
2 years ago
3
Make sure Lily is in ATGU lab meeting presentation rotation
#222
ch-kr
closed
2 years ago
3
Add documentation to repo
#221
ch-kr
closed
1 year ago
3
Change code to allow for data freezes
#220
ch-kr
closed
2 years ago
0
Schedule more standups
#219
ch-kr
closed
2 years ago
1
Add more frequent updates
#218
ch-kr
closed
2 years ago
0
MPC code improvements
#217
ch-kr
closed
1 year ago
1
Dig into additional breaks behavior
#216
ch-kr
closed
2 years ago
6
Investigate running simul break search after single/additional break search
#215
ch-kr
closed
2 years ago
1
Investigate running additional break search after simul breaks
#214
ch-kr
closed
2 years ago
1
Test adding spliceAI to MPC
#212
ch-kr
closed
1 year ago
1
Investigate inputs to CADD/REVEL
#211
ch-kr
closed
1 year ago
1
Work on AGBT abstract/circulate
#210
ch-kr
closed
2 years ago
0
Investigate simultaneous breaks results
#209
ch-kr
closed
2 years ago
0
Investigate lowering RMC chisq thresholds
#208
ch-kr
closed
2 years ago
7
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