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broadinstitute / seqr-loading-pipelines

hail-based pipelines for annotating variant callsets and exporting them to elasticsearch
MIT License
22 stars 20 forks source link

remove "ignore_missing_samples_when_subsetting" #803

Closed bpblanken closed 1 month ago

bpblanken commented 1 month ago

this was removed from airflow a bit ago and isn't used any longer. the current behavior is to exclude incomplete families and post them in slack/metadata file, failing if all families are excluded.