search

broadinstitute / seqr-loading-pipelines

hail-based pipelines for annotating variant callsets and exporting them to elasticsearch
MIT License
22 stars 20 forks source link

Move VEP files from a `110` path to `GRCh38`. #844

Closed bpblanken closed 3 months ago

bpblanken commented 3 months ago

In preparation for supporting GRCh37 on VEP 11190. This is cleaner anyways:

bblanken@wmbbe-67c seqr-loading-pipelines % gsutil ls gs://seqr-reference-data/vep/GRCh38/
gs://seqr-reference-data/vep/GRCh38/AlphaMissense_hg38.tsv.gz
gs://seqr-reference-data/vep/GRCh38/AlphaMissense_hg38.tsv.gz.tbi
gs://seqr-reference-data/vep/GRCh38/Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz
gs://seqr-reference-data/vep/GRCh38/Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz.fai
gs://seqr-reference-data/vep/GRCh38/Homo_sapiens.GRCh38.dna.primary_assembly.fa.gz.gzi
gs://seqr-reference-data/vep/GRCh38/homo_sapiens_vep_110_GRCh38.tar.gz
gs://seqr-reference-data/vep/GRCh38/uORF_5UTR_GRCh38_PUBLIC.txt
gs://seqr-reference-data/vep/GRCh38/vep-GRCh38.json