Once the sample QC pipeline is ran on DRAGEN samples who have had sample QC ran on their GATK data , do a modest audit of the outputs to ensure nothing is alarmingly different. Of note (though I haven't thought enough about it to have strong opinions) is to see if the Sample QC quality flags change or not
Once the sample QC pipeline is ran on DRAGEN samples who have had sample QC ran on their GATK data , do a modest audit of the outputs to ensure nothing is alarmingly different. Of note (though I haven't thought enough about it to have strong opinions) is to see if the Sample QC quality flags change or not