Pipeline `complete()` needs to consider pedigree/remap information.

broadinstitute / seqr-loading-pipelines

hail-based pipelines for annotating variant callsets and exporting them to elasticsearch

MIT License

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Pipeline `complete()` needs to consider pedigree/remap information. #854

Closed bpblanken closed 1 month ago

bpblanken commented 1 month ago

Currently, a project is considered "loaded" if the callset is present on the globals of the project tables. Because we need to support loading partial projects, we need to consider the pedigree/remap information as mutable.

bpblanken commented 1 month ago

We've known about this for months but not fixed: https://github.com/broadinstitute/seqr-loading-pipelines/pull/761#discussion_r1572678190