broadinstitute / seqr

web-based analysis tool for rare disease genomics
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Clicking on variant type to show transcripts not working #4160

Closed anneodonnell closed 2 weeks ago

anneodonnell commented 2 weeks ago

Describe the bug I need to check a variant identify in other transcripts but when I try to do this, rather than showing the different transcripts, it is taking me to a blank page.

Link to page(s) where bug is occurring https://seqr.broadinstitute.org/summary_data/saved_variants/ALL/ENSG00000102038

I tried another random project from the variant search page and it is also happening here. Clicked on this page: https://seqr.broadinstitute.org/variant_search/results/6258cd3552a27459f79b883d4568985f?page=1&sort=xpos Lands me on this blank page https://seqr.broadinstitute.org/variant_search/results/6258cd3552a27459f79b883d4568985f?page=1&sort=xpos

Scope of the bug Are you experiencing this issue in all projects? Within specific families within one project? In at least 2 random projects, one from saved variants page and one from variant search page. Probably a general issue.

Screenshots If applicable, add screenshots to help explain your problem.

image
hanars commented 2 weeks ago

I am able to open all the links you are showing with no issue. Does refreshing the page fix the issue for you?

msingerb commented 2 weeks ago

I am having the same problem. Refreshing has not fixed it and others are having the same problem in different projects. When I refresh it just goes back to the saved variant page but I can't see the different transcripts.

anneodonnell commented 2 weeks ago

I was also having the same problem today when I checked but didn’t troubleshoot further.

From: msingerb @.> Date: Friday, June 14, 2024 at 1:23 PM To: broadinstitute/seqr @.> Cc: O'Donnell, Anne @.>, Author @.> Subject: Re: [broadinstitute/seqr] Clicking on variant type to show transcripts not working (Issue #4160) [EXTERNAL]

I am having the same problem. Refreshing has not fixed it and others are having the same problem in different projects.

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hanars commented 2 weeks ago

this is now fixed for all GRCh38 variants, there is still a bug for GRCh37

hanars commented 2 weeks ago

this is now fixed for all variants