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broadinstitute / seqr

web-based analysis tool for rare disease genomics
GNU Affero General Public License v3.0
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Cached gene breakdown does not work with compound hets in hail backend #4441

Closed hanars closed 3 weeks ago

hanars commented 4 weeks ago

Example: https://seqr.broadinstitute.org/variant_search/results/c840476daaaf3d9aa68008532baefa9f?page=2&sort=xpos

Error: https://console.cloud.google.com/errors/detail/CNeI_ricms-MAg;time=P30D;locations=global?project=seqr-project

Logs: https://console.cloud.google.com/logs/query;query=error_groups.id%3D%22CNeI_ricms-MAg%22%0AlogName:%22stdout%22%0Aresource.type%3D%22k8s_container%22%0Aresource.labels.pod_name%3D%22seqr-5d4f995fd8-2xqq6%22%0Aresource.labels.namespace_name%3D%22default%22%0Aresource.labels.cluster_name%3D%22seqr-cluster-prod%22%0Aresource.labels.location%3D%22us-central1-b%22%0Aresource.labels.container_name%3D%22seqr%22%0Aresource.labels.project_id%3D%22seqr-project%22;cursorTimestamp=2024-10-18T19:51:20.770972991Z;startTime=2024-10-18T19:21:50.770Z;endTime=2024-10-18T20:21:50.770Z?project=seqr-project

 File "/seqr/seqr/views/apis/variant_search_api.py", line 255, in get_variant_gene_breakdown
    gene_counts = get_variant_query_gene_counts(results_model, user=request.user)
  File "/seqr/seqr/utils/search/utils.py", line 302, in get_variant_query_gene_counts
    return _get_gene_aggs_for_cached_variants(previous_search_results)
  File "/seqr/seqr/utils/search/utils.py", line 325, in _get_gene_aggs_for_cached_variants
    )(var['transcripts'])
TypeError: list indices must be integers or slices, not str