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broadinstitute / single_cell_portal

Tutorials, workflows, and convenience scripts for Single Cell Portal
https://singlecell.broadinstitute.org/single_cell
BSD 3-Clause "New" or "Revised" License
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Upstream adapter script for inferCNV reference analysis #57

Closed eweitz closed 5 years ago

eweitz commented 5 years ago

This adds an upstream adapter script for inferCNV reference analysis. It converts SCP metadata and cluster files to an inferCNV annotations file. inferCNV uses the annotations file to determine which cells are references (i.e. control, normal) and which are observations (i.e. case, test).

See #55 for prior work.