Closed erikfel97 closed 4 years ago
karstenkrug
commented
4 years ago Please pull the latest version of the repo which does not require the cmapR package, see below:
https://github.com/broadinstitute/ssGSEA2.0/issues/14#issuecomment-596668692
Please let me know if this works for you. K
erikfel97
commented
4 years ago Hello, Thank you for your fast response. I've pulled the latest version of the repo. As I'm new to R I'm not sure where and how I should specify the .gct file I'm interested to analyze and the specific .gmt file I've created before. Your advice will be highly appreciated
Best Erik Feldman
מאת: Karsten Krug notifications@github.com נשלח: יום שני 09 מרץ 2020 19:29 אל: broadinstitute/ssGSEA2.0 ssGSEA2.0@noreply.github.com עותק: Erik Feldman erik.feldman@campus.technion.ac.il; Author author@noreply.github.com נושא: Re: [broadinstitute/ssGSEA2.0] Constant Error (#15)
Please pull the latest version of the repo which does not require the cmapR package, see below:
Please let me know if this works for you. K
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Hi, I tried to run the package using R version 3.6.1, I managed to load "cmapR" package and changed "parse.gctx" to "parse_gctx" in ssgsea-gui.R and ssGSEA2.0. Every time I try to run ssgsea-gui.R this error message appears:
`parsing as GCT v1.3
exprs_GSE13254_ssGSEA-scores.gct 1 rows, 86 cols, 175 row descriptors, 0 col descriptors Error in dimnames(rdesc) <- list(rid, rhd) : length of 'dimnames' [1] not equal to array extent`
Your advice will be highly appreciated.