How do I perform ssGSEA on single cell RNA seq data when it has already been preprocessed in Seurat version v5?

broadinstitute / ssGSEA2.0

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)

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How do I perform ssGSEA on single cell RNA seq data when it has already been preprocessed in Seurat version v5? #29

Open Saumya513 opened 8 months ago

Saumya513 commented 8 months ago

I have scRNA seq data for knockout and wildtype cells. I have already run made umap clusters using the Seurat pipeline. I wish to perform ssGSEA after that. How do I go about it?

Thank you for any help!