Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
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Error in ssGSEA2(input.ds = opt$input.ds, output.prefix = opt$output.prefix, : object 'm' not found #31
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cindysimm opened 4 months ago
Hi, I'm using GenePattern for PTM-SEA analysis. However, the program is error. In stderr.txt file, there is a description of the error:
parsing as GCT v1.2 /opt/gpcloud/gp_home/users/guest_96259/uploads/tmp/run602331894243547394.tmp/input.data/1/pho_aml_try.gct 998 rows, 47 cols, 0 row descriptors, 0 col descriptors Error in ssGSEA2(input.ds = opt$input.ds, output.prefix = opt$output.prefix, : object 'm' not found Execution halted
What is the reason for this? Thank you for your attention!