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broadinstitute / ssGSEA2.0

Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)
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socket issue #5

Closed juechenyang closed 5 years ago

juechenyang commented 5 years ago

Hi,

I am trying to use the command line script "ssgsea-cli.R". However, it always produce the error like

"Error in socketConnection("localhost", port = port, server = TRUE, blocking = TRUE, : all connections are in use Calls: ssGSEA2 ... makePSOCKcluster -> newPSOCKnode -> socketConnection Execution halted Error in gzfile(file, "rb") : all connections are in use Calls: ... tryCatch -> tryCatchList -> tryCatchOne -> "

Do you know how to fix it? Thanks so much

karstenkrug commented 5 years ago

Hi, can you try to run it with -l FALSE?

juechenyang commented 5 years ago

Thanks! it works