Open maxozo opened 4 weeks ago
I resolved it by doing this as per my pull request. https://github.com/broadinstitute/tensorqtl/compare/master...maxozo:tensorqtl:patch-1 Untill this is merged i have made a copy of genotypeio.py with a patch and i load it from my local files instead of tensorqtl package.
e97f4ea903b47b139a47de6e9d2e3bf140e49d6f should fix this.
This causes thensorqtl to fail. I have 4 phenotypes, all 4 are dropped as there are no variants in the region that are passing the thresholds predefined. As all of thme are dropped there is nothing left to test and the thread gets stuck.