Question - genetic data from related

broadinstitute / tensorqtl

Ultrafast GPU-enabled QTL mapper

BSD 3-Clause "New" or "Revised" License

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Closed dpelegri closed 1 year ago

dpelegri commented 1 year ago

Hi,

I wonder if TensorQTL allows to analyse genetic data from related individuals (ie. mother-child GWAS data):

gene expression = SNP-mother + SNP-child + covariates

Or if there is any way to modify the code to fit it. Thank you Dolors

francois-a commented 1 year ago

A future version may support this, but currently you'll need to restrict the dataset to unrelated individuals.