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broadinstitute / tensorqtl

Ultrafast GPU-enabled QTL mapper
BSD 3-Clause "New" or "Revised" License
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broken link for Geuvadis example datasets #97

Closed arunhpatil closed 1 year ago

arunhpatil commented 1 year ago

Hi,

I am trying to follow the notebook example with Geuvadis datasets. I can't download the files as the source seems to be broken. Can you update the source link or provide those files?

# !wget https://personal.broadinstitute.org/francois/geuvadis/GEUVADIS.445_samples.GRCh38.20170504.maf01.filtered.nodup.bed
# !wget https://personal.broadinstitute.org/francois/geuvadis/GEUVADIS.445_samples.GRCh38.20170504.maf01.filtered.nodup.bim
# !wget https://personal.broadinstitute.org/francois/geuvadis/GEUVADIS.445_samples.GRCh38.20170504.maf01.filtered.nodup.fam   
# !wget https://personal.broadinstitute.org/francois/geuvadis/GEUVADIS.445_samples.covariates.txt
# !wget https://personal.broadinstitute.org/francois/geuvadis/GEUVADIS.445_samples.expression.bed.gz

ERROR 404: Not Found.

Thank you, Arun.

francois-a commented 1 year ago

Hi, thanks for pointing this out. The repository now includes a smaller test dataset, and the notebook was updated for this.