Fix bug that caused too large of sample lists per variant

broadinstitute / tgg_methods

Repo for miscellaneous methods developed by the methods group that don't fit anywhere else

MIT License

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Fix bug that caused too large of sample lists per variant #53

Closed mike-w-wilson closed 1 year ago

mike-w-wilson commented 1 year ago

There was a bug in the previous code that allowed non-adj GTs to be included in the count of non_ref samples at each site. This fixes that issue by adding the samples annotation upstream and removing an unnecessary filtering step.

mike-w-wilson commented 1 year ago

Sorry @ch-kr , it dismissed your review again -- I'll look into what causes this. Would you mind approving again if the changes look good?