Readviz - Githubissues

broadinstitute / ukbb_qc

QCing the UKBB

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Readviz #199

Closed ch-kr closed 3 years ago

ch-kr commented 3 years ago

Added script to extract UKBB sample genotypes for variants unique to the UKBB (not in gnomAD). Extracts genotypes from unrelated, high quality samples only.

Essentially the same script as https://github.com/broadinstitute/gnomad-readviz/blob/master/step1__select_samples.py with some UKBB-specific modifications.

Should the readviz functions be moved somewhere else?

ch-kr commented 3 years ago

Moved readviz functions to gnomad repo in this PR: https://github.com/broadinstitute/gnomad_methods/pull/357

bw2 commented 3 years ago

can't comment on ukbb functions, but the readviz part LGTM