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broadinstitute / ukbb_qc

QCing the UKBB
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UKB QC of 470K WES #228

Open dianacornejo opened 1 year ago

dianacornejo commented 1 year ago

Hello, I was wondering if this QC is going to be released as a product to the UKB (list of variants and samples) so that other researchers could start from here running their own analyses. If this is not the case then another question would be, was this QC ran within the RAP system and what are the resources in terms of instance type/ time need to analyze such huge amount of data? Are there any protocols made available for other reseachers to follow? Thanks in advance

ch-kr commented 1 year ago

Hi, thanks for reaching out. All data processed from this pipeline (sample and variant QC results) were returned to the UKB via DNANexus. Unfortunately, I do not know where these files are located within their access management systems.