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broadinstitute / viral-assemble

viral-ngs: genome assembly and scaffolding
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refine_assembly: tolerate whitespace in fasta headers #49

Closed dpark01 closed 2 months ago

dpark01 commented 2 months ago

This PR makes assembly.refine_assembly tolerate whitespace and other unusual characters in the fasta sequence headers by sanitizing the headers prior to refinement/polishing.

Also updates viral-core 2.3.5 to 2.3.6