broadinstitute / viral-baseimage

Broad Viral Genomics base docker image
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add qsv to docker image #26

Closed tomkinsc closed 7 months ago

tomkinsc commented 7 months ago

This adds qsv to the Docker image, a tool for manipulating and querying tabular text files (tsv, csv). The qsv binary is installed from a tagged release available on GitHub since qsv is not yet available via an apt repo. The zip archive distributed for qsv contains several builds, each with varying features enabled. To reduce the image space required for qsv, the install script included in this PR currently adds only the qsvlite binary (also available as symlink named qsv), which is much smaller in size than the fully-featured qsv.