search

broadinstitute / viral-classify

viral-ngs: taxonomic identification, classification, and filtering steps
Other
1 stars 0 forks source link

expose more blast parameters on command line #35

Closed golu099 closed 5 months ago

golu099 commented 11 months ago

In order to support @lakras 's invocations of megablast we need to extend existing blast wrappers to allow for additional parameters, including custom outfmt, max_target_seqs, task (megablast instead of blastn), and the filter to tax id list option.