broadinstitute / viral-core

viral-ngs: read QC, barcode metrics, spike-in metrics, Illumina metrics and demux
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convert all json map values to strings #68

Closed dpark01 closed 3 years ago

dpark01 commented 3 years ago

illumina_demux outputs some metadata in json files which then get read into WDL Map[String,String] objects via the WDL read_json function. Most engines are not smart enough to dynamically coerce integers to strings during this load, so we will need to keep things simple in our json outputs here and convert all numbers to strings before writing out.