broadinstitute / viral-ngs

Viral genomics analysis pipelines
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add fallback method for bioconda wrapper of gatk v3 #902

Closed tomkinsc closed 5 years ago

tomkinsc commented 5 years ago

add install method for gatk executable as well as gatk3 as provided by bioconda. The current recipe uses gatk3, however a new install received a package build with the older gatk executable name (some bioconda packages are currently in build flux). This adds a fallback method so either executable supplied by bioconda will work.