broadinstitute / viral-ngs

Viral genomics analysis pipelines
Other
190 stars 67 forks source link

Replace remote S3 paths with local paths for test_snake dryruns. #915

Closed yesimon closed 5 years ago

yesimon commented 5 years ago

Save time querying S3 remote file presence during dryruns. Since the files are not specified directly in config (they get operations to add suffixes in the rules), need to create a fake tree of files (or hardcode the paths to rewrite).