open_or_gzopen -> compressed_open. Add support for zstd.

broadinstitute / viral-ngs

Viral genomics analysis pipelines

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open_or_gzopen -> compressed_open. Add support for zstd. #937

Open yesimon opened 5 years ago

yesimon commented 5 years ago

Zstd has a nonstandard python api which requires customization. Also allows for multithreading compression.

yesimon commented 5 years ago

Resolves #929 #715

dpark01 commented 5 years ago

Oh one more thing, edit the description of this PR (or do it in a commit message) to include the magic words "closes (issue x) and closes (issue y)" or "fixes" or "resolves".. simply referencing the issues w/o the magic words won't do it. https://help.github.com/en/articles/closing-issues-using-keywords