broadinstitute / viral-ngs

Viral genomics analysis pipelines
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add aggregate_spike_count to reports.py #955

Closed tomkinsc closed 5 years ago

tomkinsc commented 5 years ago

This adds a new function, aggregate_spike_count, to reports.py to produce a matrix of spike-in counts per-sample from a directory containing array of per-sample spike-in count files. This is in contrast to consolidate_spike_count which simply concatenates the count files (without extraneous columns).