move metagenomics.py taxlevel_summary to separate task

broadinstitute / viral-ngs

Viral genomics analysis pipelines

Other

187 stars 66 forks source link

move metagenomics.py taxlevel_summary to separate task #964

Closed tomkinsc closed 5 years ago

tomkinsc commented 5 years ago

move metagenomics.py taxlevel_summary to separate WDL task and call this after kraken where it is called; this also allows aggregation of kraken reports created previously or separately