broadinstitute / viral-ngs

Viral genomics analysis pipelines
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install conda packages to separate environment within Docker container #980

Closed tomkinsc closed 4 years ago

tomkinsc commented 4 years ago

With this PR, conda packages are installed to a separate conda environment within the Docker container rather than within the base environment. This is useful since overriding base env package versions can break conda. This is also another step toward being able to install task-specific dependencies for more minimal Docker containers.