Right now, the ncbi.prep_genbank_files command produces a set of SQN files for Genbank submission that hard codes in viral-ngs as the assembly method. Since we want to allow others to use this genbank submission pipeline for genomes potentially produced by other pipelines, we should expose an optional parameter to specify one's own assembly method string (and, if not supplied, it can default to viral-ngs).
Right now, the ncbi.prep_genbank_files command produces a set of SQN files for Genbank submission that hard codes in viral-ngs as the assembly method. Since we want to allow others to use this genbank submission pipeline for genomes potentially produced by other pipelines, we should expose an optional parameter to specify one's own assembly method string (and, if not supplied, it can default to viral-ngs).