broadinstitute / viral-pipelines

viral-ngs: complete pipelines
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add workflows to add to or create library and sample tables based on demultiplexing output #507

Closed tomkinsc closed 7 months ago

tomkinsc commented 7 months ago

This PR adds one new workflows:

It also adds the same functionality of the above workflow as an optional step executed after demux by the existing demux_deplete workflow, if the input insert_demux_outputs_into_terra_tables=true, using outputs passed directly from demultiplexing rather than live table data

These workflows rely on a new task, also added by this PR:

tomkinsc commented 7 months ago

Good point RE the half-dozen or so workflow-level inputs of demux_deplete_and_table_insert. If we're ready to include the table functionality as an optional step of demux_deplete, I'll add it to that workflow and remove the then-redundant demux_deplete_and_table_insert workflow.